I don't think the 3DS is far superior at all. There's nice QoL for sure. The change to Zora swimming to use magic was a dumb decision and the deku scrub water jumps feel terrible. Not to mention the whole game is brighter compared to the N64 version, which ruins the atmosphere to me. I like both versions, but the 3DS is more accessible, not superior imo. Here's a good video about it if anyone is interested https://www.youtube.com/watch?v=653wuaP0wzs